1ULI

Biphenyl dioxygenase (BphA1A2) derived from Rhodococcus sp. strain RHA1

Structural Biology Knowledgebase: 1ULI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1ULI

Classification: OXIDOREDUCTASE

Total Structure Weight: 221835.83

Macromolecule Entities
Molecule Chains Length Organism Details
biphenyl dioxygenase large subunit A, C, E 460 Rhodococcus jostii EC#: 1.14.12.18 IUBMB
Gene Name(s): bphA1 bphAa RHA1_ro08060
biphenyl dioxygenase small subunit B, D, F 187 Rhodococcus jostii EC#: 1.14.12.18 IUBMB
Gene Name(s): bphA2 bphAb RHA1_ro08059

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FES
Query on FES

A, C, E FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A, B, C, E FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.167
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 137.74 α = 90.00
b = 137.74 β = 90.00
c = 237.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-09-12
  • Released Date: 2004-09-28
  • Deposition author(s): Furusawa, Y., Nagarajan, V., Masai, E., Tanokura, M., Fukuda, M., Senda, T.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4