1UB8

Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue

Structural Biology Knowledgebase: 1UB8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1UB8

Classification: DNA

Total Structure Weight: 14334.77

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*CP*GP*AP*AP*GP*C)-3' A, B, C... , D, E, F A, B, C, D, E, F 7 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCO
Query on NCO

A, B, C, D, E, F COBALT HEXAMMINE(III)
Co H18 N6
DYLMFCCYOUSRTK-FGTKAUEHAT
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.194
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.67 α = 90.00
b = 48.86 β = 90.00
c = 63.76 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-03-31
  • Released Date: 2004-03-09
  • Deposition author(s): Sunami, T., Kondo, J., Hirao, I., Watanabe, K., Miura, K., Takenaka, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4