1TRA

RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES

Structural Biology Knowledgebase: 1TRA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1TRA

Classification: T-RNA

Total Structure Weight: 25011.83

Macromolecule Entities
Molecule Chains Length Organism Details
TRNAPHE A 76 Saccharomyces cerevisiae

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 11 Unique
ID Chains Type Formula 2D Diagram Parent
2MG
Query on 2MG
A RNA LINKING C11 H16 N5 O8 P G
H2U
Query on H2U
A RNA LINKING C9 H15 N2 O9 P U
M2G
Query on M2G
A RNA LINKING C12 H18 N5 O8 P G
OMC
Query on OMC
A RNA LINKING C10 H16 N3 O8 P C
OMG
Query on OMG
A RNA LINKING C11 H16 N5 O8 P G
YG
Query on YG
A RNA LINKING C21 H29 N6 O12 P G
PSU
Query on PSU
A RNA LINKING C9 H13 N2 O9 P U
5MC
Query on 5MC
A RNA LINKING C10 H16 N3 O8 P C
7MG
Query on 7MG
A RNA LINKING C11 H18 N5 O8 P G
5MU
Query on 5MU
A RNA LINKING C10 H15 N2 O9 P U
1MA
Query on 1MA
A RNA LINKING C11 H16 N5 O7 P A

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.168
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 56.00 α = 90.00
b = 33.30 β = 90.40
c = 63.00 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1986-05-16
  • Released Date: 1986-07-14
  • Deposition author(s): Westhof, E., Sundaralingam, M.
  • Previous versions: 2TNA 7TNA 8TNA

Revision History

  • 2011-07-27
    Type: Other | Details: update release date
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update