1SIE

MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.65 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 1SIE

Classification: VIRUS

Total Structure Weight: 1302750.38

Macromolecule Entities
Molecule Chains Length Organism Details
POLYOMAVIRUS COAT PROTEIN VP1 A, B, C..., D, E, FA, B, C, D, E, F 383 Mus musculus polyomavirus 1 Mutation: S6A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

A, B, C, D, E, F O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B, C, D, E, F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A, B, C, D, E, F BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.65 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.244
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 570.00 α = 90.00
b = 570.00 β = 90.00
c = 570.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-12-12
  • Released Date: 1996-06-20
  • Deposition author(s): Stehle, T., Harrison, S.C.

Revision History

  • Version 1_0: 1996-06-20

    Type: Initial release

  • Version 1_1: 2008-03-03

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance