1SH9

Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1SH9

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 22392.38

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: PROTEASE
Mutation: K20R, V32I, L33F, M36I, I54V, L63P, A71V, V82A, I84V, L90M
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RIT
Query on RIT

B RITONAVIR
A-84538 (Synonym)
C37 H48 N6 O5 S2
NCDNCNXCDXHOMX-XGKFQTDJSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RIT N/A in BindingDB
Ki: 932 nM  BindingMOAD
Ki: 932 nM  PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001001
Query on PRD_001001
B RITONAVIR Peptide-like /
Inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.213
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 62.12 α = 90.00
b = 62.12 β = 90.00
c = 84.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-25
  • Released Date: 2004-10-05
  • Deposition author(s): Clemente, J.C., Moose, R.E., Hemrajani, R., Govindasamy, L., Reutzel, R., McKenna, R., Abanje-McKenna, M., Goodenow, M.M., Dunn, B.M.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • 2013-02-27
    Type: Other