1SH9

Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease

Structural Biology Knowledgebase: 1SH9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SH9

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 22392.54

Macromolecule Entities
Molecule Chains Length Organism Details
POL polyprotein A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: PROTEASE
Mutation: K20R, V32I, L33F, M36I, I54V, L63P, A71V, V82A, I84V, L90M
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RIT
Query on RIT

B RITONAVIR
A-84538 (Synonym)
C37 H48 N6 O5 S2
NCDNCNXCDXHOMX-XGKFQTDJSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RIT N/A in BindingDB
Ki: 932 nM  BindingMOAD
Ki: 932 nM  PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001001 B RITONAVIR Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.213
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.12 α = 90.00
b = 62.12 β = 90.00
c = 84.78 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-25
  • Released Date: 2004-10-05
  • Deposition author(s): Clemente, J.C., Moose, R.E., Hemrajani, R., Govindasamy, L., Reutzel, R., McKenna, R., Abanje-McKenna, M., Goodenow, M.M., Dunn, B.M.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence