1S68

Structure and Mechanism of RNA Ligase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1S68

Classification: LIGASE

Total Structure Weight: 28677.55

Macromolecule Entities
Molecule Chains Length Organism Details
RNA Ligase 2 A 249 Escherichia virus t4 EC#: 6.5.1.3 IUBMB
Fragment: N-terminal domain (residues 1-249)
Gene Name(s): Y10A 24.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.190
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.72 α = 90.00
b = 89.89 β = 90.00
c = 47.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-22
  • Released Date: 2004-02-24
  • Deposition author(s): Ho, C.K., Wang, L.K., Lima, C.D., Shuman, S.

Revision History

  • Version 1_0: 2004-02-24

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance