Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.     DOI:10.2210/pdb1s1i/pdb

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Split Entry The asymmetric unit for this structure is composed of multiple PDB entries: 1S1H   1S1I   Download All Files          Primary Citation       Molecular Description Hide Classification: Ribosome Structure Weight: 1513935.35   Molecule: 5.8S/25S ribosomal RNA Polymer: 1 Type: polyribonucleotide Length: 2999 Chains: 3 Other Details: REPRESENTED BY THE ANALOGOUS MOLECULE OF H. MARISMORTUI TAKEN FROM PDB ENTRY 1FFK AND SUPPLEMENTED WITH SEQUENCES FROM PDB ENTRIES 1MMS, 1MZP AND 1GIY Molecule: 5S RIBOSOMAL RNA Polymer: 2 Type: polyribonucleotide Length: 125 Chains: 4 Other Details: REPRESENTED BY THE ANALOGOUS MOLECULE OF H. MARISMORTUI TAKEN FROM PDB ENTRY 1FFK Molecule: 60S ribosomal protein L1 Polymer: 3 Type: polypeptide(L) Length: 217 Chains: A Molecule: 60S ribosomal protein L2 Polymer: 4 Type: polypeptide(L) Length: 253 Chains: B Molecule: 60S ribosomal protein L3 Polymer: 5 Type: polypeptide(L) Length: 386 Chains: C Molecule: 60S ribosomal protein L4-B Polymer: 6 Type: polypeptide(L) Length: 361 Chains: D Molecule: 60S ribosomal protein L5 Polymer: 7 Type: polypeptide(L) Length: 222 Chains: E Molecule: 60S ribosomal protein L7-A Polymer: 8 Type: polypeptide(L) Length: 162 Chains: F Molecule: 60S ribosomal protein L8-A Polymer: 9 Type: polypeptide(L) Length: 119 Chains: G Molecule: 60S ribosomal protein L9-A Polymer: 10 Type: polypeptide(L) Length: 191 Chains: H Molecule: 60S ribosomal protein L10 Polymer: 11 Type: polypeptide(L) Length: 168 Chains: I Molecule: 60S ribosomal protein L11 Polymer: 12 Type: polypeptide(L) Length: 173 Chains: J Molecule: 60S ribosomal protein L12 Polymer: 13 Type: polypeptide(L) Length: 131 Chains: K Molecule: 60S ribosomal protein L15-A Polymer: 14 Type: polypeptide(L) Length: 203 Chains: L Molecule: 60S ribosomal protein L16-A Polymer: 15 Type: polypeptide(L) Length: 146 Chains: M Molecule: 60S ribosomal protein L17-A Polymer: 16 Type: polypeptide(L) Length: 183 Chains: N Molecule: 60S ribosomal protein L18 Polymer: 17 Type: polypeptide(L) Length: 120 Chains: O Molecule: 60S ribosomal protein L19 Polymer: 18 Type: polypeptide(L) Length: 142 Chains: P Molecule: 60S ribosomal protein L21-A Polymer: 19 Type: polypeptide(L) Length: 100 Chains: Q Molecule: 60S ribosomal protein L23 Polymer: 20 Type: polypeptide(L) Length: 137 Chains: R Molecule: 60S ribosomal protein L24-A Polymer: 21 Type: polypeptide(L) Length: 56 Chains: S Molecule: 60S ribosomal protein L25 Polymer: 22 Type: polypeptide(L) Length: 83 Chains: T Molecule: 60S ribosomal protein L26-A Polymer: 23 Type: polypeptide(L) Length: 126 Chains: U Molecule: 60S ribosomal protein L28 Polymer: 24 Type: polypeptide(L) Length: 148 Chains: V Molecule: 60S ribosomal protein L32 Polymer: 25 Type: polypeptide(L) Length: 130 Chains: 0 Molecule: 60S ribosomal protein L31 Polymer: 26 Type: polypeptide(L) Length: 112 Chains: W Molecule: 60S ribosomal protein L35 Polymer: 27 Type: polypeptide(L) Length: 120 Chains: X Molecule: 60S ribosomal protein L37-A Polymer: 28 Type: polypeptide(L) Length: 87 Chains: Y Molecule: 60S ribosomal protein L42 Polymer: 29 Type: polypeptide(L) Length: 105 Chains: Z Molecule: 60S ribosomal protein L43 Polymer: 30 Type: polypeptide(L) Length: 91 Chains: 9       Source Hide Polymer: 1 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 2 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 3 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 4 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 5 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 6 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 7 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 8 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 9 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 10 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 11 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 12 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 13 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 14 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 15 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 16 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 17 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 18 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 19 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 20 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 21 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 22 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 23 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 24 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 25 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 26 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 27 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 28 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 29 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast   Polymer: 30 Scientific Name: Saccharomyces cerevisiae Common Name: Baker's yeast         Related PDB Entries Hide Id Details 1FFK  CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION  1FJF  STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT  1FKA  STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION  1GIX  CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION.  1GIY  CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5 A RESOLUTION.  1K5X  STRUCTURE OF THE 80S RIBOSOME FROM SACHAROMYCES CEREVISIAE TRNA-RIBOSOME AND SUBUNIT-SUBUNIT INTERACTIONS. THE 40S RIBOSOMAL SUBUNIT.  1K5Y  STRUCTURE OF THE 80S RIBOSOME FROM SACHAROMYCES CEREVISIAE TRNA-RIBOSOME AND SUBUNIT-SUBUNIT INTERACTIONS. THE 60S RIBOSOMAL SUBUNIT.  1MMS  CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN L11-RNA COMPLEX  1MZP  Structure Of The L1 Protuberance In The Ribosome  1NOU  Crystal Structure Of Yeast Elongation Factor 2 In Complex With Sordarin        Derived Data Hide SCOP Classification v1.75 - (28 Domains) PFAM Classification - (31 Domains) GO Terms - (245 Terms)     Reset Layout

Biological Assembly     More Images... View in Jmol Composite of PDB entries (1S1H and 1S1I)         Deposition Summary Hide Authors:   Spahn, C.M.,   Gomez-Lorenzo, M.G.,   Grassucci, R.A.,   Jorgensen, R.,   Andersen, G.R.,   Beckmann, R.,   Penczek, P.A.,   Ballesta, J.P.G.,   Frank, J. Deposition:   2004-01-06 Release:   2004-05-25 Last Modified (REVDAT):   2009-09-22       Experimental Details Hide Method:   ELECTRON MICROSCOPY Experimental Data:    [ EMDB ]