1RVG

crystal strcuture of class II fructose-bisphosphate aldolase from Thermus aquaticus in complex with Y

Structural Biology Knowledgebase: 1RVG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RVG

Classification: LYASE

Total Structure Weight: 134100.97

Macromolecule Entities
Molecule Chains Length Organism Details
fructose-1,6-bisphosphate aldolase A, B, C, D 305 Thermus aquaticus EC#: 4.1.2.13 IUBMB

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO
Query on CO

A, B, C, D COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
YT3
Query on YT3

A YTTRIUM (III) ION
Y
GRTBAGCGDOYUBE-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.225
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 99.86 α = 90.00
b = 57.55 β = 90.26
c = 138.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-13
  • Released Date: 2004-01-27
  • Deposition author(s): Izard, T., Sygusch, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4