1RV8

Class II fructose-1,6-bisphosphate aldolase from Thermus aquaticus in complex with cobalt

Structural Biology Knowledgebase: 1RV8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RV8

Classification: LYASE

Total Structure Weight: 134108.27

Macromolecule Entities
Molecule Chains Length Organism Details
fructose-1,6-bisphosphate aldolase A, B, C, D 305 Thermus aquaticus EC#: 4.1.2.13 IUBMB
Gene Name(s): fba BVI061214_00874
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO
Query on CO

A, B, C, D COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.211
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 99.35 α = 90.00
b = 57.63 β = 90.23
c = 138.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-12
  • Released Date: 2004-01-27
  • Deposition author(s): Izard, T., Sygusch, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4