1RUY

1930 Swine H1 Hemagglutinin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.248 
  • R-Value Observed: 0.248 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

The structure and receptor binding properties of the 1918 influenza hemagglutinin.

Gamblin, S.J.Haire, L.F.Russell, R.J.Stevens, D.J.Xiao, B.Ha, Y.Vasisht, N.Steinhauer, D.A.Daniels, R.S.Elliot, A.Wiley, D.C.Skehel, J.J.

(2004) Science 303: 1838-1842

  • DOI: https://doi.org/10.1126/science.1093155
  • Primary Citation of Related Structures:  
    1RU7, 1RUY, 1RUZ, 1RV0, 1RVT, 1RVX, 1RVZ

  • PubMed Abstract: 

    The 1918 influenza pandemic resulted in about 20 million deaths. This enormous impact, coupled with renewed interest in emerging infections, makes characterization of the virus involved a priority. Receptor binding, the initial event in virus infection, is a major determinant of virus transmissibility that, for influenza viruses, is mediated by the hemagglutinin (HA) membrane glycoprotein. We have determined the crystal structures of the HA from the 1918 virus and two closely related HAs in complex with receptor analogs. They explain how the 1918 HA, while retaining receptor binding site amino acids characteristic of an avian precursor HA, is able to bind human receptors and how, as a consequence, the virus was able to spread in the human population.


  • Organizational Affiliation

    Medical Research Council (MRC) National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
hemagglutininA [auth H],
C [auth J],
E [auth L]
328Influenza A virus (A/swine/Iowa/15/1930(H1N1))Mutation(s): 0 
UniProt
Find proteins for Q9WCD9 (Influenza A virus (strain A/Swine/Iowa/15/1930 H1N1))
Explore Q9WCD9 
Go to UniProtKB:  Q9WCD9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WCD9
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
hemagglutininB [auth I],
D [auth K],
F [auth M]
160Influenza A virus (A/swine/Iowa/15/1930(H1N1))Mutation(s): 0 
UniProt
Find proteins for P18875 (Influenza A virus (strain A/Kiev/59/1979 H1N1))
Explore P18875 
Go to UniProtKB:  P18875
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP18875
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.248 
  • R-Value Observed: 0.248 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 203.106α = 90
b = 83.279β = 106.67
c = 178.234γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
CNSrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-03-30
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2023-08-23
    Changes: Data collection, Database references, Refinement description, Structure summary