1QK7

Solution structure of Selenocosmia huwena lectin-I(SHL-I) by 2D-NMR


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: STEREOCHEMICAL ENERGY AND THE RESULT OF PROCHECK 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Three Dimensional Structure of Selenocosmia Huwena Lectin-I (Shl-I) from the Venom of the Spider Selenocosmia Huwena by 2D-NMR

Lu, S.Liang, S.Gu, X.

(2000) J Protein Chem 18: 609

  • DOI: https://doi.org/10.1023/a:1020663619657
  • Primary Citation of Related Structures:  
    1QK7

  • PubMed Abstract: 

    The three-dimensional structure of native SHL-I, a lectin from the venom of the Chinese bird spider Selenocosmia huwena, has been determined from two-dimensional 1H NMR spectroscopy recorded at 500 and 600 MHz. The best 10 structures have NOE violation <0.3 A, dihedral violation <2 deg, and average root-mean-square differences of 0.85 + 0.06 A over backbone atoms. The structure consists of a three-stranded antiparallel beta-sheet and three turns. The three disulfide bridges and three-stranded antiparallel beta-sheet form a inhibitor cystine knot motif which is adopted by several other small proteins, such as huwentoxin-I, omega-conotoxin, and gurmarin. The C-terminal fragment from Leu28 to Trp32 adopts two sets of conformations corresponding to the cis and trans conformations of Pro31. The structure of SHL-I also has high similarity with that of the N-terminus of hevein, a lectin from rubber-tree latex.


  • Organizational Affiliation

    National Laboratory of Protein Engineering and Plant Genetic Engineering, Peking University, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SELENOCOSMIA HUWENA LECTIN-I32Cyriopagopus schmidtiMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q86C51 (Cyriopagopus schmidti)
Explore Q86C51 
Go to UniProtKB:  Q86C51
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86C51
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: STEREOCHEMICAL ENERGY AND THE RESULT OF PROCHECK 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-08-20
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance