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CRYSTAL STRUCTURE OF EPIDOXORUBICIN-FORMALDEHYDE VIRTUAL CROSSLINK OF DNA
 
 
DOI:10.2210/pdb1qda/pdb   NDB ID: DD0022
1QDA
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 2368.78
     
    Molecule:5' -D(CP*GP*CP*(G49)P*CP*GP)-3'
    Polymer:1Type:polydeoxyribonucleotideLength:6
    Chains:A
    Other Details:DOXORUBICIN COVALENTLY ATTACHED TO N2(G4) VIA METHYLENE BRIDGE
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1D15  1D15 CONTAINS THE SAME DRUG COMPLEXED WITH D(CGATCG) 
    1D33  1D33 CONTAINS THE SAME DNA COMPLEXED WITH DAUNOMYCIN 
    1D54  1D54 CONTAINS THE SAME DRUG COMPLEXED WITH D(TGTACA) 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DM6     4'-EPIDOXORUBICIN C27 H30 N O11 3DLigand Explorer Link out to Ligand Expos:DM6 Link out to SuperLigands:DM6 Link out to SuperHapten:DM6
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    G49 N2-METHYL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE (parent: DG)(type: dnaLinking) C11 H16 N5 O7 P Link out to Ligand Expos:G49 Link out to SuperLigands:G49 Link out to SuperHapten:G49 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Podell, E.R.,   Harrington, D.J.,   Taatjes, D.J.,   Koch, T.H.

    Deposition:   1999-05-17
    Release:   1999-09-15
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 1.60
    R-Value: 0.205 (obs.)
    R-Free: 0.268
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 28.11 α = 90.00 
    b = 28.11 β = 90.00 
    c = 52.54 γ = 90.00