1PT7

Crystal structure of the apo-form of the yfdW gene product of E. coli

Structural Biology Knowledgebase: 1PT7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 1PT7

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 97770.55

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein yfdW A, B 437 Escherichia coli Shigella flexneri EC#: 2.8.3.16 IUBMB
Gene Name(s): frc yfdW b2374 JW2371
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.159
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.92 α = 90.00
b = 118.63 β = 90.00
c = 136.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-23
  • Released Date: 2003-09-09
  • Deposition author(s): Gruez, A., Roig-Zamboni, V., Valencia, C., Campanacci, V., Cambillau, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor