1PQQ

NMR Structure of a Cyclic Polyamide-DNA Complex

Structural Biology Knowledgebase: 1PQQ SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20
  • Conformers Submitted: 21
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1PQQ

Classification: DNA

Total Structure Weight: 7656.48

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*CP*TP*AP*AP*CP*AP*GP*GP*C)-3' A 11 synthetic
5'-D(*GP*CP*CP*TP*GP*TP*TP*AP*GP*CP*G)-3' B 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CYE
Query on CYE

B 45-(3-AMINOPROPYL)-5,11,22,28,34-PENTAMETHYL- 3,9,15,20,26,32,38,43-OCTAOXO-2,5,8,14,19,22,25,28,31,34,37,42,45,48- TETRADECAAZA-11-AZONIAHEPTACYCLO[42.2.1.1~4,7~.1~10,13~.1~21,24~.1~27,30~.1~33,36~]DOPENTACONTA- 1(46),4(52),6,10(51),12,21(50),23,27(49),29,33(48),35,44(47)- DODECAENE
C45 H55 N16 O8
GJDFXZIHTKRSEM-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20
  • Conformers Submitted: 21
  • Selection Criteria: --

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-06-18
  • Released Date: 2004-06-29
  • Deposition author(s): Zhang, Q., Dwyer, T.J., Tsui, V., Case, D.A., Cho, J., Dervan, P.B., Wemmer, D.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4