1PMJ

Crystal structure of Caldicellulosiruptor saccharolyticus CBM27-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.174
  • R-Value Work: 0.124

Literature

Macromolecules
Sequence Display for 1PMJ

Classification: HYDROLASE

Total Structure Weight: 21033.51

Macromolecule Entities
Molecule Chains Length Organism Details
beta-1,4-mannanase X 185 Caldicellulosiruptor saccharolyticus EC#: 3.2.1.78 IUBMB
Fragment: Carbohydrate-binding module
Mutation: F69I, P104A
Gene Name(s): manA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

X 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

X ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

X CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.174
  • R-Value Work: 0.124
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 54.99 α = 90.00
b = 54.99 β = 90.00
c = 115.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-11
  • Released Date: 2004-06-22
  • Deposition author(s): Roske, Y., Sunna, A., Heinemann, U.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance