1PL3

Cytochrome Domain Of Cellobiose Dehydrogenase, M65H mutant

Structural Biology Knowledgebase: 1PL3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 1PL3

Classification: OXIDOREDUCTASE

Total Structure Weight: 43048.37

Macromolecule Entities
Molecule Chains Length Organism Details
Cellobiose dehydrogenase A, B 186 Phanerochaete chrysosporium EC#: 1.1.99.18 IUBMB
Fragment: CYTOCHROME TYPE B HEME DOMAIN
Mutation: Q1X, M65H
Gene Name(s): CDH-1 CDH-2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PG
Query on 1PG

A 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}- ETHOXY)-ETHANOL
C11 H24 O6
SLNYBUIEAMRFSZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A, B L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.173
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 139.03 α = 90.00
b = 139.03 β = 90.00
c = 52.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-06
  • Released Date: 2003-07-01
  • Deposition author(s): Rotsaert, F.A.J., Hallberg, B.M., de Vries, S., Moenne-Loccoz, P., Divne, C., Gold, M.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update