1PIK

ESPERAMICIN A1-DNA COMPLEX, NMR, 4 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 4
  • Conformers Submitted: 4
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1PIK

Classification: DNA

Total Structure Weight: 6206.83

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(C*GP*GP*AP*TP*CP*CP*GP)-3') A, B 8 synthetic COMPLEXED WITH ESPERAMICIN A1

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTC
Query on MTC

B [1,8-DIHYDROXY-11-OXO-13-(2-METHYLTRITHIO- ETHYLIDENE)-BICYCLO[7.3.1]TRIDECA-4,9-DIENE- 2,6-DIYN-10-YL]-CARBAMIC ACID METHYL ESTER
C18 H17 N O4 S3
PNQXYYVQKWQRKL-LUWMVQLVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DPA
Query on DPA

A 4,5-DIMETHOXY-N-(2'-METHOXYPROPENOYL ANTHRANILATE)
C13 H15 N O5
RAMLKCJDRRPGLL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAT
Query on MAT

A 2,4-DIDEOXY-4-[2-(PROPYL)AMINO]-3-O-METHYL ALPHA- L-THREO-PENTOPYRANOSIDE
C9 H19 N O3
GSIBYRWDWAKORN-XHNCKOQMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TMR
Query on TMR

B 2,6-DIDEOXY-4-THIOMETHYL-BETA-D-RIBOHEXOPYRANOSIDE
C7 H14 O3 S
PUECVJLJBFVUMI-XZBKPIIZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DAG
Query on DAG

B 4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE
C6 H13 N O4
RJKBJEZZABBYBA-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DLF
Query on DLF

B 2-DEOXY-ALPHA-L-FUCOPYRANOSIDE
C6 H12 O4
FDWRIIDFYSUTDP-UNTFVMJOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 4
  • Conformers Submitted: 4
  • Selection Criteria: --

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-12-11
  • Released Date: 1997-03-12
  • Deposition author(s): Kumar, R.A., Ikemoto, N., Patel, D.J.

Revision History

  • Version 1_0: 1997-03-12

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance