1PGZ

Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)

Structural Biology Knowledgebase: 1PGZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 1PGZ

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 25987.60


Macromolecule Entities
Molecule Chains Length Organism Details
Heterogeneous nuclear ribonucleoprotein A1 A 195 Homo sapiens Fragment: Residues 1-195
Gene Name(s): HNRNPA1 Gene View HNRPA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*T*TP*AP*GP*GP*GP*TP*TP*AP*GP*(6MI)P*G)-3' B 12 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
6MI
Query on 6MI
B DNA LINKING C12 H16 N5 O8 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.235
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 51.62 α = 90.00
b = 51.62 β = 90.00
c = 171.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-28
  • Released Date: 2003-11-11
  • Deposition author(s): Myers, J.C., Moore, S.A., Shamoo, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4