1P1C

Guanidinoacetate Methyltransferase with Gd ion

Structural Biology Knowledgebase: 1P1C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1P1C

Classification: TRANSFERASE

Total Structure Weight: 46156.47

Macromolecule Entities
Molecule Chains Length Organism Details
Guanidinoacetate N-methyltransferase A, B 199 Rattus norvegicus EC#: 2.1.1.2 IUBMB
Mutation: E119V
Gene Name(s): Gamt
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GD3
Query on GD3

A GADOLINIUM ION
Gd
RJOJUSXNYCILHH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.193
  • Space Group: P 43

Unit Cell:

Length (Å) Angle (°)
a = 54.22 α = 90.00
b = 54.22 β = 90.00
c = 156.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-12
  • Released Date: 2003-04-29
  • Deposition author(s): Komoto, J., Takusagawa, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4