1P13

Crystal Structure of the Src SH2 Domain Complexed with Peptide (SDpYANFK)

Structural Biology Knowledgebase: 1P13 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1P13

Classification: TRANSFERASE

Total Structure Weight: 25912.53

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene tyrosine-protein kinase Src A, B 102 Gallus gallus EC#: 2.7.10.2 IUBMB
Fragment: SH2 DOMAIN
Gene Name(s): SRC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide C, D 7 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAC
Query on CAC

A, B CACODYLATE ION
dimethylarsinate (Synonym)
C2 H6 As O2
OGGXGZAMXPVRFZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
C, D L-PEPTIDE LINKING C9 H12 N O6 P TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.63 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.207
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 58.38 α = 90.00
b = 58.79 β = 90.00
c = 62.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-11
  • Released Date: 2003-08-19
  • Deposition author(s): Sonnenburg, E.D., Bilwes, A., Hunter, T., Noel, J.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update