1OYR

Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis

Structural Biology Knowledgebase: 1OYR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.278

Literature

Macromolecules
Sequence Display for 1OYR

Classification: TRANSFERASE

Total Structure Weight: 161771.56

Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease PH A, B, C..., D, E, FA, B, C, D, E, F 245 Bacillus subtilis EC#: 2.7.7.56 IUBMB
Gene Name(s): rph BSU28370
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, D, E CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.278
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 99.79 α = 90.00
b = 146.49 β = 90.00
c = 152.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-07
  • Released Date: 2004-03-09
  • Deposition author(s): Harlow, L.S., Kadziola, A., Jensen, K.F., Larsen, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4