1OYB

OLD YELLOW ENZYME AT 2 ANGSTROMS RESOLUTION: OVERALL STRUCTURE, LIGAND BINDING AND COMPARISON WITH RELATED FLAVOPROTEINS

Structural Biology Knowledgebase: 1OYB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 1OYB

Classification: OXIDOREDUCTASE(FLAVOPROTEIN)

Total Structure Weight: 45650.62

Macromolecule Entities
Molecule Chains Length Organism Details
OLD YELLOW ENZYME A 400 Saccharomyces pastorianus EC#: 1.6.99.1 IUBMB
Gene Name(s): OYE1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HBA
Query on HBA

A P-HYDROXYBENZALDEHYDE
C7 H6 O2
RGHHSNMVTDWUBI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.173
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 142.88 α = 90.00
b = 142.88 β = 90.00
c = 43.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-08-25
  • Released Date: 1994-11-30
  • Deposition author(s): Fox, K.M., Karplus, P.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4