1OND

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Structural Biology Knowledgebase: 1OND SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.261

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1OND

Classification: RIBOSOME

Total Structure Weight: 956221.04


Macromolecule Entities
Molecule Chains Length Organism Details
50S ribosomal protein L22 Q 134 Deinococcus radiodurans Gene Name(s): rplV DR_0316
50S ribosomal protein L32 Z 60 Deinococcus radiodurans Gene Name(s): rpmF DR_2366
Macromolecule Entities
Molecule Chains Length Organism Details
23S RIBOSOMAL RNA 0 2880 Deinococcus radiodurans

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAO
Query on TAO

0 TROLEANDOMYCIN
4,,5S (Synonym)
C41 H67 N O15
LQCLVBQBTUVCEQ-CLPGKMRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.261
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 170.25 α = 90.00
b = 411.09 β = 90.00
c = 695.34 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-02-27
  • Released Date: 2003-04-15
  • Deposition author(s): Berisio, R., Schluenzen, F., Harms, J., Bashan, A., Auerbach, T., Baram, D., Yonath, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4