1OIY

STRUCTURE OF HUMAN THR160-PHOSPHO CDK2/CYCLIN A COMPLEXED WITH A 6-CYCLOHEXYLMETHYLOXY-2-ANILINO-PURINE INHIBITOR

Structural Biology Knowledgebase: 1OIY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.244

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1OIY

Classification: KINASE

Total Structure Weight: 129453.26

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A, C 302 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: PHOSPHORYLATED ON THR160
Gene Name(s): CDK2 Gene View CDKN2
CYCLIN A2 B, D 260 Homo sapiens Fragment: RESIDUES 174-432
Gene Name(s): CCNA2 Gene View CCN1 CCNA

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
N41
Query on N41

A, C 4-(6-CYCLOHEXYLMETHOXY-9H-PURIN-2-YLAMINO)- -BENZAMIDE
C19 H22 N6 O2
RUUOIINPNMNPIU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SGM
Query on SGM

B, D MONOTHIOGLYCEROL
C3 H8 O2 S
PJUIMOJAAPLTRJ-GSVOUGTGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
N41 N/A in BindingDB
IC50: 64 nM  BindingMOAD
IC50: 64 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, C L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.244
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.00 α = 90.00
b = 134.87 β = 90.00
c = 147.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-26
  • Released Date: 2004-07-13
  • Deposition author(s): Pratt, D.J., Endicott, J.A., Noble, M.E.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4