1OGT

CRYSTAL STRUCTURE OF HLA-B*2705 COMPLEXED WITH THE VASOACTIVE INTESTINAL PEPTIDE TYPE 1 RECEPTOR (VIPR) PEPTIDE (RESIDUES 400-408)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.128

Literature

Macromolecules
Sequence Display for 1OGT

Classification: IMMUNE SYSTEM

Total Structure Weight: 45723.03

Macromolecule Entities
Molecule Chains Length Organism Details
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN A 276 Homo sapiens Fragment: EXTRACELLULAR DOMAIN, RESIDUES 25-300
Gene Name(s): HLA-B Gene View HLAB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETA-2-MICROGLOBULIN B 100 Homo sapiens Fragment: RESIDUES 21-119
Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 1 C 9 Homo sapiens Fragment: RESIDUES 400-408
Gene Name(s): VIPR1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.128
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 51.26 α = 90.00
b = 81.78 β = 107.61
c = 65.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-13
  • Released Date: 2004-01-29
  • Deposition author(s): Hulsmeyer, M., Fiorillo, M.T., Bettosini, F., Sorrentino, R., Saenger, W., Ziegler, A., Uchanska-Ziegler, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4