1OGK

THE CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI DUTPASE IN COMPLEX WITH DUDP

Structural Biology Knowledgebase: 1OGK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1OGK

Classification: HYDROLASE

Total Structure Weight: 129582.83

Macromolecule Entities
Molecule Chains Length Organism Details
DEOXYURIDINE TRIPHOSPHATASE A, B, D, E 283 Trypanosoma cruzi EC#: 3.6.1.23 IUBMB
Gene Name(s): Tcdut
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DUD
Query on DUD

B, D, E DEOXYURIDINE-5'-DIPHOSPHATE
C9 H14 N2 O11 P2
QHWZTVCCBMIIKE-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.205
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.39 α = 90.00
b = 50.31 β = 101.35
c = 111.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-07
  • Released Date: 2004-01-22
  • Deposition author(s): Harkiolaki, M., Dodson, E.J., Bernier-Villamor, V., Turkenburg, J.P., Gonzalez-Pacanowska, D., Wilson, K.S.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4