1OGE

THE STRUCTURE OF BACILLUS SUBTILIS RBSD COMPLEXED WITH RIBOSE 5-PHOSPHATE

Structural Biology Knowledgebase: 1OGE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1OGE

Classification: TRANSPORT

Total Structure Weight: 72444.36

Macromolecule Entities
Molecule Chains Length Organism Details
HIGH AFFINITY RIBOSE TRANSPORT PROTEIN RBSD A, B, C, D, E 131 Bacillus subtilis EC#: 5.4.99.62 IUBMB
Gene Name(s): rbsD BSU35930
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RP5
Query on RP5

A, B, C, D, E 5-O-phosphono-beta-D-ribofuranose
4,,3S (Synonym)
C5 H11 O8 P
KTVPXOYAKDPRHY-TXICZTDVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.194
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 123.81 α = 90.00
b = 108.56 β = 128.72
c = 83.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-30
  • Released Date: 2003-09-01
  • Deposition author(s): Kim, M.-S., Oh, B.-H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4