1OFX

CRYSTAL STRUCTURE OF AN OKAZAKI FRAGMENT AT 2 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 1OFX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.156

Literature

Macromolecules
Sequence Display for 1OFX

Classification: DNA-RNA HYBRID

Total Structure Weight: 6340.40

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*GP*TP*AP*TP*AP*CP*GP*C)-3') A 10 synthetic
DNA/RNA (5'-R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*CP*C)-3') B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPM
Query on SPM

B SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.156
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 24.03 α = 90.00
b = 43.67 β = 90.00
c = 48.95 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1991-10-17
  • Released Date: 1993-04-15
  • Deposition author(s): Egli, M., Usman, N., Zhang, S., Rich, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4