1ODU

CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA ALPHA-FUCOSIDASE IN COMPLEX WITH FUCOSE

Structural Biology Knowledgebase: 1ODU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1ODU

Classification: HYDROLASE

Total Structure Weight: 104873.71

Macromolecule Entities
Molecule Chains Length Organism Details
PUTATIVE ALPHA-L-FUCOSIDASE A, B 449 Thermotoga maritima EC#: 3.2.1.51 IUBMB
Details: ORF TM0306
Gene Name(s): TM_0306
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FUL
Query on FUL

A, B BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.201
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 179.08 α = 90.00
b = 179.08 β = 90.00
c = 174.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-14
  • Released Date: 2004-01-15
  • Deposition author(s): Sulzenbacher, G., Bignon, C., Bourne, Y., Henrissat, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor