1OBL

crystal structure of the S133A mutant of Malonamidase E2 complexed with malonate from Bradyrhizobium japonicum

Structural Biology Knowledgebase: 1OBL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1OBL

Classification: HYDROLASE

Total Structure Weight: 87648.47

Macromolecule Entities
Molecule Chains Length Organism Details
MALONAMIDASE E2 A, B 414 Bradyrhizobium japonicum Mutation: S133A
Details: CIS PEPTIDE BOND BETWEEN GLYCINE 130 AND SERINE 131
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLA
Query on MLA

A, B MALONIC ACID
DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; METHANEDICARBOXYLIC ACID (Synonym)
C3 H4 O4
OFOBLEOULBTSOW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.188
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 103.63 α = 90.00
b = 95.22 β = 90.00
c = 74.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-31
  • Released Date: 2004-02-13
  • Deposition author(s): Shin, S., Oh, B.-H.

Revision History

  • 2015-04-22
    Type: Refinement description | Details: REMARK 3
  • 2015-04-22
    Type: Data collection | Details: REMARK 200
  • 2015-04-22
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2015-04-22
    Type: Version format compliance | Details: REMARK 4
  • 2015-04-22
    Type: Function and keywords | Details: KEYWDS
  • 2015-04-22
    Type: Other | Details: REMARK 525,HEADER
  • 2015-04-22
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2015-04-22
    Type: Geometry validation | Details: REMARK 500