1OAU

Fv Structure of the IgE SPE-7 in complex with DNP-Ser (immunising hapten)

Structural Biology Knowledgebase: 1OAU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1OAU

Classification: IMMUNE SYSTEM

Total Structure Weight: 101589.90

Macromolecule Entities
Molecule Chains Length Organism Details
IMMUNOGLOBULIN E H, I, J, K 122 Mus musculus Fragment: FV REGION, RESIDUES 1-122
Gene Name(s): Ighv1-72 Gm16709
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IMMUNOGLOBULIN E L, M, N, O 110 Mus musculus Fragment: FV REGION, RESIDUES 1-110
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DNF
Query on DNF

H, J 2,4-DINITROPHENOL
C6 H4 N2 O5
UFBJCMHMOXMLKC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SER
Query on SER

H, J SERINE
C3 H7 N O3
MTCFGRXMJLQNBG-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IMD
Query on IMD

L, N IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.226
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 79.46 α = 90.00
b = 79.48 β = 90.00
c = 168.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-21
  • Released Date: 2004-01-15
  • Deposition author(s): James, L.C., Roversi, P., Tawfik, D.

Revision History

  • 2013-10-30
    Type: Source and taxonomy | Details: SOURCE
  • 2013-10-30
    Type: Biological assembly | Details: REMARK 350
  • 2013-10-30
    Type: Secondary structure | Details: SHEET
  • 2013-10-30
    Type: Other | Details: REMARK 465,REMARK 525
  • 2013-10-30
    Type: Version format compliance | Details: REMARK 4