1O9R

THE X-RAY CRYSTAL STRUCTURE OF AGROBACTERIUM TUMEFACIENS DPS, A MEMBER OF THE FAMILY THAT PROTECT DNA WITHOUT BINDING

Structural Biology Knowledgebase: 1O9R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 1O9R

Classification: IRON-BINDING PROTEIN

Total Structure Weight: 107724.88

Macromolecule Entities
Molecule Chains Length Organism Details
AGROBACTERIUM TUMEFACIENS DPS A, B, C..., D, E, FA, B, C, D, E, F 162 Agrobacterium tumefaciens Gene Name(s): dps Atu2477 AGR_C_4495
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

B, E 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B, C, D, E, F FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.170
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 106.05 α = 90.00
b = 90.35 β = 90.00
c = 105.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-18
  • Released Date: 2003-05-29
  • Deposition author(s): Ilari, A., Ceci, P., Chiancone, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4