1O75

TP47, THE 47-KILODALTON LIPOPROTEIN OF TREPONEMA PALLIDUM

Structural Biology Knowledgebase: 1O75 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1O75

Classification: LIPOPROTEINULLNTIGEN

Total Structure Weight: 92667.16

Macromolecule Entities
Molecule Chains Length Organism Details
47 KDA MEMBRANE ANTIGEN A, B 415 Treponema pallidum Mutation: H5S, H9S
Gene Name(s): TP_0574
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PDX
Query on PDX

A, B 2,3-DI-O-SULFO-ALPHA-D-GLUCOPYRANOSE
C6 H12 O12 S2
ORUZACWROKWTRH-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XE
Query on XE

A, B XENON
Xe
FHNFHKCVQCLJFQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.205
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.93 α = 90.00
b = 128.93 β = 90.00
c = 151.16 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-23
  • Released Date: 2002-11-01
  • Deposition author(s): Deka, R.K., Machius, M., Norgard, M.V., Tomchick, D.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4