1NYW

The high resolution structures of RmlC from Streptoccus suis in complex with dTDP-D-glucose

Structural Biology Knowledgebase: 1NYW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 1NYW

Classification: ISOMERASE

Total Structure Weight: 46105.66

Macromolecule Entities
Molecule Chains Length Organism Details
dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase A, B 197 Streptococcus suis EC#: 5.1.3.13 IUBMB
Gene Name(s): rmlC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAU
Query on DAU

A, B 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE
C16 H26 N2 O16 P2
YSYKRGRSMLTJNL-URARBOGNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.173
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 50.59 α = 90.00
b = 47.90 β = 99.02
c = 72.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-14
  • Released Date: 2003-06-24
  • Deposition author(s): Dong, C., Major, L.L., Allen, A., Blankenfeldt, W., Maskell, D., Naismith, J.H.

Revision History

  • 2012-05-23
    Type: Refinement description | Details: --
  • 2012-05-23
    Type: Atom nomenclature | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4