1NY3

Crystal structure of ADP bound to MAP KAP kinase 2

Structural Biology Knowledgebase: 1NY3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.259

Literature

Macromolecules
Sequence Display for 1NY3

Classification: TRANSFERASE

Total Structure Weight: 46057.37

Macromolecule Entities
Molecule Chains Length Organism Details
MAP kinase-activated protein kinase 2 A 400 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): MAPKAPK2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.259
  • Space Group: F 41 3 2

Unit Cell:

Length (Å) Angle (°)
a = 253.05 α = 90.00
b = 253.05 β = 90.00
c = 253.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-11
  • Released Date: 2003-10-14
  • Deposition author(s): Underwood, K.W., Parris, K.D., Federico, E., Mosyak, L., Shane, T., Taylor, M., Svenson, K., Liu, Y., Hsiao, C.L., Wolfrom, S., Maguire, M., Malakian, K., Telliez, J.B., Lin, L.L., Kriz, R.W., Seehra, J., Somers, W.S., Stahl, M.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values