1NQ7

Characterization of ligands for the orphan nuclear receptor RORbeta

Structural Biology Knowledgebase: 1NQ7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1NQ7

Classification: TRANSCRIPTION

Total Structure Weight: 29798.87

Macromolecule Entities
Molecule Chains Length Organism Details
NUCLEAR RECEPTOR ROR-BETA A 244 Rattus norvegicus Fragment: LIGAND-BINDING DOMAIN
Gene Name(s): Rorb Nr1f2 Rzrb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
STEROID RECEPTOR COACTIVATOR-1 B 10 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: SECOND NR-BOX
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ARL
Query on ARL

A 7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6- TRIENOIC ACID
C23 H32 O2
JMPZTWDLOGTBPM-OUQSKUGOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ARL N/A in BindingDB
Ki: 160 nM  BindingMOAD
Ki: 160 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.201
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.82 α = 90.00
b = 58.34 β = 90.00
c = 105.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-21
  • Released Date: 2003-09-23
  • Deposition author(s): Stehlin-Gaon, C., Willmann, D., Sanglier, S., Van Dorsselaer, A., Renaud, J.-P., Moras, D., Schuele, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4