1NPE

Crystal structure of Nidogen/Laminin Complex

Structural Biology Knowledgebase: 1NPE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 1NPE

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 48039.43

Macromolecule Entities
Molecule Chains Length Organism Details
nidogen A 267 Mus musculus EC#: 2.7.11.27 IUBMB
Fragment: G3 YWTD domain, sequence database residue 941-1203
Gene Name(s): Nid1 Ent
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Laminin gamma-1 chain B 164 Mus musculus Fragment: modules III 3-5, sequence database residue 769-932
Gene Name(s): Lamc1 Lamb-2 Lamc-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.223
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 72.18 α = 90.00
b = 75.83 β = 90.00
c = 104.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-17
  • Released Date: 2003-08-12
  • Deposition author(s): Takagi, J., Yang, Y.T., Liu, J.-H., Wang, J.-H., Springer, T.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4