1NOY

DNA POLYMERASE (E.C.2.7.7.7)/DNA COMPLEX

Structural Biology Knowledgebase: 1NOY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 1NOY

Classification: TRANSFERASE / DNA

Total Structure Weight: 91620.27


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (DNA POLYMERASE (E.C.2.7.7.7)) A, B 388 Enterobacteria phage t4 sensu lato EC#: 2.7.7.7 IUBMB 3.1.11 IUBMB
Mutation: K2D, I250L
Gene Name(s): 43
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*TP*T)-3') S 3 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed:
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 114.70 α = 90.00
b = 109.66 β = 90.00
c = 70.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-02-16
  • Released Date: 1996-10-14
  • Deposition author(s): Wang, J., Yu, P., Lin, T.C., Konigsberg, W.H., Steitz, T.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4