1NKQ

Crystal structure of yeast ynq8, a fumarylacetoacetate hydrolase family protein

Structural Biology Knowledgebase: 1NKQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1NKQ

Classification: Structural Genomics Unknown Function

Total Structure Weight: 176303.61

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region A, B, C..., D, E, FA, B, C, D, E, F 259 Saccharomyces cerevisiae Mutation: M1M, M104M, M148M, M189M, M203M, M243M
Gene Name(s): FMP41 YNL168C N1696
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A, B, C, D, E, F ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.216
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 57.71 α = 90.00
b = 85.99 β = 90.00
c = 316.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-03
  • Released Date: 2004-06-15
  • Deposition author(s): Eswaramoorthy, S., Kumaran, D., Daniels, B., Studier, F.W., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4