1NID

THE STRUCTURE OF CU-NITRITE REDUCTASE FROM ACHROMOBACTER CYCLOCLASTES AT FIVE PH VALUES, WITH NITRITE BOUND AND WITH TYPE II CU DEPLETED

Structural Biology Knowledgebase: 1NID SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.149

Literature

Macromolecules
Sequence Display for 1NID

Classification: OXIDOREDUCTASE (NITRIC OXIDE(A))

Total Structure Weight: 37233.27

Macromolecule Entities
Molecule Chains Length Organism Details
NITRITE REDUCTASE A 340 Achromobacter cycloclastes EC#: 1.7.2.1 IUBMB
Details: PH 5.4 ("NT1") NITRITE SOAKED
Gene Name(s): nirK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO2
Query on NO2

A NITRITE ION
N O2
IOVCWXUNBOPUCH-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Observed: 0.149
  • Space Group: P 21 3

Unit Cell:

Length (Å) Angle (°)
a = 97.60 α = 90.00
b = 97.60 β = 90.00
c = 97.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-07-03
  • Released Date: 1995-12-07
  • Deposition author(s): Adman, E.T., Godden, J.W., Turley, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values