1NAM

MURINE ALLOREACTIVE SCFV TCR-PEPTIDE-MHC CLASS I MOLECULE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1NAM

Classification: IMMUNE SYSTEM

Total Structure Weight: 71022.09

Macromolecule Entities
Molecule Chains Length Organism Details
BM3.3 T Cell Receptor alpha-Chain A 116 Mus musculus Fragment: Fv Fragment, Variable Domain
Gene Name(s): TRADV16D TRAV16
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BM3.3 T Cell Receptor beta-Chain B 113 Mus musculus Fragment: Fv Fragment, Variable Domain
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
H-2 class I histocompatibility antigen, K-B alpha chain precursor H 275 Mus musculus Fragment: Extracellular Domains (alpha1, alpha2, alpha3)
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Nucleocapsid P 8 Indiana vesiculovirus Fragment: Vesicular Stomatitis Virus Nucleoprotein fragment, residues (52-59)
Gene Name(s): N
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin L 100 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.230
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 101.86 α = 90.00
b = 101.86 β = 90.00
c = 201.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-28
  • Released Date: 2003-03-11
  • Deposition author(s): Reiser, J.-B., Darnault, C., Gregoire, C., Mosser, T., Mazza, G., Kearnay, A., van der Merwe, P.A., Fontecilla-Camps, J.C., Housset, D., Malissen, B.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance