1N6M

Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, Ncd

Structural Biology Knowledgebase: 1N6M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 1N6M

Classification: CELL CYCLE

Total Structure Weight: 93848.79

Macromolecule Entities
Molecule Chains Length Organism Details
Claret segregational protein A, B 409 Drosophila melanogaster Fragment: NCD
Mutation: N600K
Gene Name(s): ncd CA(ND) CG7831
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.260
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 162.60 α = 90.00
b = 66.60 β = 98.00
c = 94.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-11
  • Released Date: 2003-10-28
  • Deposition author(s): Yun, M., Bronner, C.E., Park, C.-G., Cha, S.-S., Park, H.-W., Endow, S.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4