1N5V

Crystal structure of a Monooxygenase from the gene ActVA-Orf6 of Streptomyces coelicolor in complex with the ligand Nanaomycin D

Structural Biology Knowledgebase: 1N5V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1N5V

Classification: OXIDOREDUCTASE

Total Structure Weight: 24257.35

Macromolecule Entities
Molecule Chains Length Organism Details
ActVA-Orf6 monooxygenase A, B 112 Streptomyces coelicolor Gene Name(s): actVA 6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NOM
Query on NOM

A 7-HYDROXY-5-METHYL-3,3A,5,11B-TETRAHYDRO- 1,4-DIOXA-CYCLOPENTA[A]ANTHRACENE-2,6,11- TRIONE
NANAOMYCIN D (Synonym)
C16 H12 O6
XUWPJKDMEZSVTP-UOSCCXBLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.214
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.39 α = 90.00
b = 59.92 β = 90.00
c = 71.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-07
  • Released Date: 2003-01-14
  • Deposition author(s): Sciara, G., Kendrew, S.G., Miele, A.E., Marsh, N.G., Federici, L., Malatesta, F., Schimperna, G., Savino, C., Vallone, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name