1N1L

CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND INHIBITOR (GW472467X)

Structural Biology Knowledgebase: 1N1L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 1N1L

Classification: Viral protein

Total Structure Weight: 47442.64

Macromolecule Entities
Molecule Chains Length Organism Details
HCV NS3 SERINE PROTEASE A, B 198 Hepatitis c virus Fragment: Protease domain
Mutation: A164T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NS4A COFACTOR C, D 23 Hepatitis c virus Fragment: Residues 21-39
Gene Name(s): NS4a/b
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRL
Query on TRL

A {1-[2-(1-FORMYL-PROPYL)-3-METHANESULFONYLAMINO- PYRROLIDINE-1-CARBONYL]-2-METHYL-PROPYL}- CARBAMIC ACID TERT-BUTYL ESTER
GW472467X (Synonym)
C19 H35 N3 O6 S
NOWIRVOXJOWTSQ-FXUDXRNXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.183
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 225.45 α = 90.00
b = 225.45 β = 90.00
c = 75.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-18
  • Released Date: 2003-10-21
  • Deposition author(s): Andrews, D.M., Chaignot, H., Coomber, B.A., Good, A.C., Hind, S.L., Jones, P.S., Mill, G., Robinson, J.E., Skarzynski, T., Slater, M.J., Somers, D.O.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4