1MZC

Co-Crystal Structure Of Human Farnesyltransferase With Farnesyldiphosphate and Inhibitor Compound 33a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1MZC

Classification: TRANSFERASE

Total Structure Weight: 94948.87

Macromolecule Entities
Molecule Chains Length Organism Details
Protein Farnesyltransferase alpha Subunit A 382 Homo sapiens EC#: 2.3.1.n3 IUBMB 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Gene Name(s): FNTA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein Farnesyltransferase beta Subunit B 437 Homo sapiens EC#: 2.5.1.58 IUBMB
Gene Name(s): FNTB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BNE
Query on BNE

B 2-[3-(3-ETHYL-1-METHYL-2-OXO-AZEPAN-3-YL)- PHENOXY]-4-[1-AMINO-1-(1-METHYL-1H-IMIDIZOL- 5-YL)-ETHYL]-BENZONITRILE
C28 H33 N5 O2
MHNMEERHZSPWFL-NSOVKSMOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FPP
Query on FPP

B FARNESYL DIPHOSPHATE
C15 H28 O7 P2
VWFJDQUYCIWHTN-YFVJMOTDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SUC
Query on SUC

B SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BNE N/A in BindingDB
IC50: 0.06 nM  BindingMOAD
IC50: 0.06 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.177
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 178.38 α = 90.00
b = 178.38 β = 90.00
c = 64.58 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-07
  • Released Date: 2003-07-08
  • Deposition author(s): deSolms, S.J., Ciccarone, T.M., MacTough, S.C., Shaw, A.W., Buser, C.A., Ellis-Hutchings, M., Fernandes, C., Hamilton, K.A., Huber, H.E., Kohl, N.E., Lobell, R.B., Robinson, R.G., Tsou, N.N., Walsh, E.S., Graham, S.L., Beese, L.S., Taylor, J.S.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance