1MP7

A Third Complex of Post-Activated Neocarzinostatin Chromophore with DNA. Bulge DNA Binding from the Minor Groove

Structural Biology Knowledgebase: 1MP7 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 9
  • Conformers Submitted: 9
  • Selection Criteria: All Calculated Structures Submitted Back Calculated Data Agree with Experimental Noesy Spectrum Structures with Acceptable Covalent Geometry Structures with Favorable Non Bond Energy Structures with the Least Restraint Violations Structures with the Lowest Energy

Literature

Macromolecules
Sequence Display for 1MP7

Classification: DNA

Total Structure Weight: 4048.04

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*CP*CP*AP*GP*AP*GP*AP*GP*C)-3' A 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCG
Query on NCG

A [(R)-4-((1,3-DIOXOLANE-2-OXY)-4-(S)-YL)-4- HYDROXY]-(R)-10-(2-METHYLAMINO-5-METHYL-2,6- DIDEOXYGALACTOPYRANOSYL-OXY)-(R)-11-(2-HYDROXY- 5-METHYL-7-METHOXY-1-NAPHTHOYL-OXY)-(R)-12- S-GLUTATHIONYL-4,10,11,12-TETRAHYDROINDACENE
NCSI-GLU, NEOCARZINOSTATIN-GLUTATHIONE CHROMOPHORE (Synonym)
C45 H52 N4 O18 S
HZICOJKOTQKXNL-RKDHACFISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 9
  • Conformers Submitted: 9
  • Selection Criteria: all calculated structures submitted, back calculated data agree with experimental NOESY spectrum, structures with acceptable covalent geometry, structures with favorable non-bond energy, structures with the least restraint violations, structures with the lowest energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-09-11
  • Released Date: 2003-02-18
  • Deposition author(s): Kwon, Y., Xi, Z., Kappen, L.S., Goldberg, I.H., Gao, X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4