1MMS

Crystal structure of the ribosomal PROTEIN L11-RNA complex

Structural Biology Knowledgebase: 1MMS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1MMS

Classification: RIBOSOME

Total Structure Weight: 70434.48


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (RIBOSOMAL PROTEIN L11) A, B 140 Thermotoga maritima Details: COVALENT MERCURY LIGAND AT CYS39
Gene Name(s): rplK TM_0454
Macromolecule Entities
Molecule Chains Length Organism Details
23S RIBOSOMAL RNA C, D 58 synthetic COVALENT MERCURY LIGAND AT U1061

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MMC
Query on MMC

A, C, D METHYL MERCURY ION
C H3 Hg
DBUXSCUEGJMZAE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CD
Query on CD

A, C, D CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.89 α = 90.00
b = 84.26 β = 90.00
c = 155.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-04-14
  • Released Date: 2000-04-17
  • Deposition author(s): Wimberly, B.T., Guymon, R., Mccutcheon, J.P., White, S.W., Ramakrishnan, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4