1MM9

Streptavidin Mutant with Insertion of Fibronectin Hexapeptide, including RGD

Structural Biology Knowledgebase: 1MM9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.133

Literature

Macromolecules
Sequence Display for 1MM9

Classification: Biotin-binding protein

Total Structure Weight: 13801.12

Macromolecule Entities
Molecule Chains Length Organism Details
Streptavidin A 130 Streptomyces avidinii Fragment: Core Streptavidin (residues 13-139)
Mutation: ΔA89, ΔT90, ΔD91
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.66 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.133
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.90 α = 90.00
b = 56.90 β = 90.00
c = 170.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-03
  • Released Date: 2003-05-06
  • Deposition author(s): Le Trong, I., McDevitt, T.C., Nelson, K.E., Stayton, P.S., Stenkamp, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values