1ML9

Structure of the Neurospora SET domain protein DIM-5, a histone lysine methyltransferase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1ML9

Classification: TRANSFERASE

Total Structure Weight: 34926.66

Macromolecule Entities
Molecule Chains Length Organism Details
Histone H3 methyltransferase DIM-5 A 302 Neurospora crassa EC#: 2.1.1.43 IUBMB
Fragment: Residues 17-318
Gene Name(s): dim-5 29E8.110 NCU04402
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNK
Query on UNK

A UNKNOWN
C4 H9 N O2
QWCKQJZIFLGMSD-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.205
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.73 α = 90.00
b = 81.56 β = 90.00
c = 101.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-30
  • Released Date: 2002-10-23
  • Deposition author(s): Zhang, X., Tamaru, H., Khan, S.I., Horton, J.R., Keefe, L.J., Selker, E.U., Cheng, X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4