1ML6

Crystal Structure of mGSTA2-2 in Complex with the Glutathione Conjugate of Benzo[a]pyrene-7(R),8(S)-Diol-9(S),10(R)-Epoxide

Structural Biology Knowledgebase: 1ML6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1ML6

Classification: TRANSFERASE

Total Structure Weight: 52243.39

Macromolecule Entities
Molecule Chains Length Organism Details
Glutathione S-Transferase GT41A A, B 221 Mus musculus EC#: 2.5.1.18 IUBMB
Mutation: C111X
Gene Name(s): Gsta2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GBX
Query on GBX

A, B 2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2- (9-HYDROXY-7,8-DIOXO-7,8,9,10-TETRAHYDRO- BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]- BUTYRIC ACID
GLUTATHIONE CONJUGATE OF (+)-ANTI-BPDE (Synonym)
C30 H27 N3 O9 S
DUWOHLGCRJLRRU-HVYZTVOGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A, B ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A, B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.200
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 99.07 α = 90.00
b = 93.90 β = 92.28
c = 52.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-30
  • Released Date: 2003-04-15
  • Deposition author(s): Gu, Y., Xiao, B., Wargo, H.L., Bucher, M.H., Singh, S.V., Ji, X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4